NiftiHeader (Artisynth API documentation)

java.lang.Object
- maspack.image.nifti.NiftiHeader

All Implemented Interfaces:: java.lang.Cloneable, Clonable

public class NiftiHeader
extends java.lang.Object
implements Clonable

Nested Class Summary

Nested Classes
Modifier and Type	Class and Description
`static class`	`NiftiHeader.DataType`
`static class`	`NiftiHeader.Extension`
`static class`	`NiftiHeader.IntentCode`
`static class`	`NiftiHeader.SliceCode`
`static class`	`NiftiHeader.Units`
`static class`	`NiftiHeader.XFormCode`

Constructor Summary

Constructors
Constructor and Description

NiftiHeader()

Constructors
Constructor and Description
`NiftiHeader()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`NiftiHeader`	`clone()`
`java.lang.String`	`getAuxFile()`
`short`	`getBitPix()`
`double`	`getCalMax()`
`double`	`getCalMin()`
`NiftiHeader.DataType`	`getDataType()`
`java.lang.String`	`getDescription()`
`long[]`	`getDim()`
`char`	`getDimInfo()`
`NiftiHeader.Extension[]`	`getExtensions()`
`NiftiHeader.IntentCode`	`getIntentCode()`
`java.lang.String`	`getIntentName()`
`double`	`getIntentP1()`
`double`	`getIntentP2()`
`double`	`getIntentP3()`
`char[]`	`getMagic()`
`double[]`	`getPixDim()`
`NiftiHeader.XFormCode`	`getQFormCode()`
`Vector3d`	`getQOffset()`
`Quaternion`	`getQuaternion()`
`double`	`getSclInter()`
`double`	`getSclSlope()`
`NiftiHeader.XFormCode`	`getSFormCode()`
`int`	`getSizeOfHeader()`
`NiftiHeader.SliceCode`	`getSliceCode()`
`double`	`getSliceDuration()`
`long`	`getSliceEnd()`
`long`	`getSliceStart()`
`AffineTransform3d`	`getSRow()`
`double`	`getTOffset()`
`long`	`getVoxOffset()`
`NiftiHeader.Units`	`getXyztUnits()`
`void`	`setAuxFile(java.lang.String aux_file)`
`void`	`setBitPix(short bitpix)`
`void`	`setCalMax(double cal_max)`
`void`	`setCalMin(double cal_min)`
`void`	`setDataType(NiftiHeader.DataType datatype)`
`void`	`setDescription(java.lang.String desc)`
`void`	`setDim(long[] dim)`
`void`	`setDimInfo(char dim_info)`
`void`	`setExtensions(NiftiHeader.Extension[] extensions)`
`void`	`setIntentCode(NiftiHeader.IntentCode intent_code)`
`void`	`setIntentName(java.lang.String intent_name)`
`void`	`setIntentP1(double intent_p1)`
`void`	`setIntentP2(double intent_p2)`
`void`	`setIntentP3(double intent_p3)`
`void`	`setMagic(char[] magic)`
`void`	`setPixDim(double[] pixdim)`
`void`	`setQFormCode(NiftiHeader.XFormCode qform_code)`
`void`	`setQOffset(Vector3d qoffset)`
`void`	`setQuaternion(Quaternion quatern)`
`void`	`setSclInter(double scl_inter)`
`void`	`setSclSlope(double scl_slope)`
`void`	`setSFormCode(NiftiHeader.XFormCode sform_code)`
`void`	`setSliceCode(NiftiHeader.SliceCode slice_code)`
`void`	`setSliceDuration(double slice_duration)`
`void`	`setSliceEnd(long slice_end)`
`void`	`setSliceStart(long slice_start)`
`void`	`setSRow(AffineTransform3d srow)`
`void`	`setTOffset(double toffset)`
`void`	`setVoxOffset(long vox_offset)`
`void`	`setXyztUnits(NiftiHeader.Units xyzt_units)`
`java.lang.String`	`toString()`

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail
- NiftiHeader
```
public NiftiHeader()
```

Method Detail

toString
```
public java.lang.String toString()
```
Overrides:

toString in class java.lang.Object

clone
```
public NiftiHeader clone()
```
Specified by:

clone in interface Clonable

Overrides:

clone in class java.lang.Object

setDescription

public void setDescription(java.lang.String desc)

getDescription

public java.lang.String getDescription()

getSizeOfHeader
```
public int getSizeOfHeader()
```

getMagic
```
public char[] getMagic()
```

setMagic
```
public void setMagic(char[] magic)
```

getDataType

public NiftiHeader.DataType getDataType()

setDataType

public void setDataType(NiftiHeader.DataType datatype)

getBitPix
```
public short getBitPix()
```

setBitPix
```
public void setBitPix(short bitpix)
```

getDim
```
public long[] getDim()
```

setDim
```
public void setDim(long[] dim)
```

getIntentP1
```
public double getIntentP1()
```

setIntentP1

public void setIntentP1(double intent_p1)

getIntentP2
```
public double getIntentP2()
```

setIntentP2

public void setIntentP2(double intent_p2)

getIntentP3
```
public double getIntentP3()
```

setIntentP3

public void setIntentP3(double intent_p3)

getPixDim
```
public double[] getPixDim()
```

setPixDim

public void setPixDim(double[] pixdim)

getVoxOffset
```
public long getVoxOffset()
```

setVoxOffset

public void setVoxOffset(long vox_offset)

getSclSlope
```
public double getSclSlope()
```

setSclSlope

public void setSclSlope(double scl_slope)

getSclInter
```
public double getSclInter()
```

setSclInter

public void setSclInter(double scl_inter)

getCalMax
```
public double getCalMax()
```

setCalMax

public void setCalMax(double cal_max)

getCalMin
```
public double getCalMin()
```

setCalMin

public void setCalMin(double cal_min)

getSliceDuration
```
public double getSliceDuration()
```

setSliceDuration

public void setSliceDuration(double slice_duration)

getTOffset
```
public double getTOffset()
```

setTOffset

public void setTOffset(double toffset)

getSliceStart
```
public long getSliceStart()
```

setSliceStart

public void setSliceStart(long slice_start)

getSliceEnd
```
public long getSliceEnd()
```

setSliceEnd

public void setSliceEnd(long slice_end)

getAuxFile
```
public java.lang.String getAuxFile()
```

setAuxFile

public void setAuxFile(java.lang.String aux_file)

getQFormCode

public NiftiHeader.XFormCode getQFormCode()

setQFormCode

public void setQFormCode(NiftiHeader.XFormCode qform_code)

getSFormCode

public NiftiHeader.XFormCode getSFormCode()

setSFormCode

public void setSFormCode(NiftiHeader.XFormCode sform_code)

getQuaternion
```
public Quaternion getQuaternion()
```

setQuaternion

public void setQuaternion(Quaternion quatern)

getQOffset
```
public Vector3d getQOffset()
```

setQOffset

public void setQOffset(Vector3d qoffset)

getSRow
```
public AffineTransform3d getSRow()
```

setSRow

public void setSRow(AffineTransform3d srow)

getSliceCode

public NiftiHeader.SliceCode getSliceCode()

setSliceCode

public void setSliceCode(NiftiHeader.SliceCode slice_code)

getXyztUnits

public NiftiHeader.Units getXyztUnits()

setXyztUnits

public void setXyztUnits(NiftiHeader.Units xyzt_units)

getIntentCode

public NiftiHeader.IntentCode getIntentCode()

setIntentCode

public void setIntentCode(NiftiHeader.IntentCode intent_code)

getIntentName

public java.lang.String getIntentName()

setIntentName

public void setIntentName(java.lang.String intent_name)

getDimInfo
```
public char getDimInfo()
```

setDimInfo

public void setDimInfo(char dim_info)

getExtensions

public NiftiHeader.Extension[] getExtensions()

setExtensions

public void setExtensions(NiftiHeader.Extension[] extensions)

Class NiftiHeader

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

NiftiHeader

Method Detail

toString

clone

setDescription

getDescription

getSizeOfHeader

getMagic

setMagic

getDataType

setDataType

getBitPix

setBitPix

getDim

setDim

getIntentP1

setIntentP1

getIntentP2

setIntentP2

getIntentP3

setIntentP3

getPixDim

setPixDim

getVoxOffset

setVoxOffset

getSclSlope

setSclSlope

getSclInter

setSclInter

getCalMax

setCalMax

getCalMin

setCalMin

getSliceDuration

setSliceDuration

getTOffset

setTOffset

getSliceStart

setSliceStart

getSliceEnd

setSliceEnd

getAuxFile

setAuxFile

getQFormCode

setQFormCode

getSFormCode

setSFormCode

getQuaternion

setQuaternion

getQOffset

setQOffset

getSRow

setSRow

getSliceCode

setSliceCode

getXyztUnits

setXyztUnits

getIntentCode

setIntentCode

getIntentName

setIntentName

getDimInfo

setDimInfo

getExtensions

setExtensions