maspack.image.nifti

Class NiftiReader

java.lang.Object

maspack.image.nifti.NiftiReader

public class NiftiReader
extends java.lang.Object

Class for reading Analyze/Nifti-format files

Author:

Antonio

Constructor Summary

Constructors

Constructor and Description
NiftiReader()

Method Summary

Modifier and Type	Method and Description
static BinaryInputStream	advanceToOffset(BinaryInputStream bis, java.io.File file, long offset)
static NiftiImage	read(java.io.File file)
static NiftiImage	read(java.io.File hdr, java.io.File img) Nifti V1 or Analyze 7.5 format with separate header and image files
static NiftiDataBuffer	readData(BinaryInputStream bis, int[] dims, NiftiHeader.DataType dataType)
static NiftiHeader.Extension[]	readExtensions(BinaryInputStream reader)
static NiftiHeader	readHeader(BinaryInputStream reader)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NiftiReader

public NiftiReader()

Method Detail

read

public static NiftiImage read(java.io.File hdr,
                              java.io.File img)
                       throws java.io.IOException

Nifti V1 or Analyze 7.5 format with separate header and image files

Parameters:

hdr - header file

img - image file

Returns:

resulting image

Throws:

java.io.IOException - on read failure

read

public static NiftiImage read(java.io.File file)
                       throws java.io.IOException

Throws:

java.io.IOException

readExtensions

public static NiftiHeader.Extension[] readExtensions(BinaryInputStream reader)
                                              throws java.io.IOException

Throws:

java.io.IOException

readHeader

public static NiftiHeader readHeader(BinaryInputStream reader)
                              throws java.io.IOException

Throws:

java.io.IOException

advanceToOffset

public static BinaryInputStream advanceToOffset(BinaryInputStream bis,
                                                java.io.File file,
                                                long offset)
                                         throws java.io.IOException

Throws:

java.io.IOException

readData

public static NiftiDataBuffer readData(BinaryInputStream bis,
                                       int[] dims,
                                       NiftiHeader.DataType dataType)
                                throws java.io.IOException

Throws:

java.io.IOException